LSR vs FORTESSA

LSR vs FORTESSA

Raw centroids

Normalized centroids

Freq cluster

Freq population

Meta Phenograph +Meta tsne

##   Running PhenoGraph...  Finding nearest neighbors...DONE ~ 0.17 s
##   Compute jaccard coefficient between nearest-neighbor sets...DONE ~ 1.872 s
##   Build undirected graph from the weighted links...DONE ~ 0.354 s
##   Run louvain clustering on the graph ...DONE ~ 0.195 s
##   Return a community class
##   -Modularity value: 0.8950466 
##   -Number of clusters: 23 DONE!
##   Running t-SNE...with seed 42  DONE

Meta Phenograph +Meta tsne

Meta Phenograph +Meta tsne

Meta Phenograph +Meta tsne

Meta Phenograph +Meta tsne

Meta Phenograph +Meta tsne

Meta Phenograph +Meta tsne

Meta Phenograph +Meta tsne

Meta Phenograph +Meta tsne

Meta Phenograph +Meta tsne

Meta Phenograph +Meta tsne

Meta Phenograph +Meta tsne

Meta Phenograph +Meta tsne

Meta Phenograph +Meta tsne

Meta Phenograph +Meta tsne

Meta Phenograph +Meta tsne

NOTES

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4729477/

The total T cells (CD3+), helper T cells (CD3+CD4+), and total B cells (CD19+) were gated. The expression of mIgD on T and B cells was analyzed by calculating the percentages of CD3+IgD+, CD3+CD4+IgD+, immature B cells (CD19+IgM+IgD-) and mature B cells (CD19+IgD+) on a flow cytometer (model FC 500; Beckman Coulter Ltd., USA)

https://www.ncbi.nlm.nih.gov/pubmed/11243700

NOTES