## Running PhenoGraph... Finding nearest neighbors...DONE ~ 0.17 s
## Compute jaccard coefficient between nearest-neighbor sets...DONE ~ 1.872 s
## Build undirected graph from the weighted links...DONE ~ 0.354 s
## Run louvain clustering on the graph ...DONE ~ 0.195 s
## Return a community class
## -Modularity value: 0.8950466
## -Number of clusters: 23 DONE!
## Running t-SNE...with seed 42 DONE
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4729477/
The total T cells (CD3+), helper T cells (CD3+CD4+), and total B cells (CD19+) were gated. The expression of mIgD on T and B cells was analyzed by calculating the percentages of CD3+IgD+, CD3+CD4+IgD+, immature B cells (CD19+IgM+IgD-) and mature B cells (CD19+IgD+) on a flow cytometer (model FC 500; Beckman Coulter Ltd., USA)